Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK
4MVA Chain:B ((26-270))
--RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE
General information:
TITO was launched using:
RESULT:
Template:
4MVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115495 for 2064 contacts (-56.0/contact) +
2D Compatibility (PS) -27034 + (NN) -14965 + (LL) 324
1D Compatibility (HY) -17600 + (ID) 5200
Total energy: -179970.0 ( -87.19 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4MVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVA-query.scw
PDB file :
Tito_Scwrl_4MVA.pdb
: