Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKTRSKLAAGFLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKK----------ELTEANYKEAYKNYTPETSVQVIKL-----------DAEDKAKSVLKDVKADGADFAKIAKEKTTATDKK-----VEYKFDSAGTSLPKEVMSAAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRSFQNKVISKALEKANVKIKDKAFAGILSQYATTSGSSSLKK |
| 3NRK Chain:A ((50-361)) | LNRVIATVGTVSISELDLDDATEKYNRLQKHLKHEDYRKS------------FRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRD------ERKRYCILKIEGKRPTP-MENLRGGIQNILYRDKEEDTF--HRWLKESRAEIPIQIFDEAYRKENKI---PLKEETFHL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NRK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10143 for 1888 contacts (-5.4/contact) +
2D Compatibility (PS) -30809 + (NN) -11725 + (LL) 1668
1D Compatibility (HY) -8800 + (ID) 1850
Total energy: -61659.0 ( -32.66 by residue)
QMean score : 0.427
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