Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIA---ETFSIILDRINQ
3UWK Chain:A ((23-227))
---GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLAR--AAAR---DRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER---
General information:
TITO was launched using:
RESULT:
Template:
3UWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57174 for 1531 contacts (-37.3/contact) +
2D Compatibility (PS) -21728 + (NN) -11620 + (LL) 1476
1D Compatibility (HY) -13200 + (ID) 4250
Total energy: -106496.0 ( -69.56 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3UWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWK-query.scw
PDB file :
Tito_Scwrl_3UWK.pdb
: