Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKFQVISHPLIQHKLSILRRTTTSTKDFRELVDEIAMLMGYEVSRDLPLEDVEIQTP--VATTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETFQPVE-------YLVKLPEDIDQR--QIFVVDPMLATGGSAILAVDSLKKRGAASIKFVCLVAAPEGVAALQEAHPDVDIYTAALDEKLNEHGYIVPGLGDAGDRLFGTK
3G6W Chain:D ((5-216))
-----VIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
3G6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169308 for 1620 contacts (-104.5/contact) +
2D Compatibility (PS) -21491 + (NN) -3155 + (LL) 572
1D Compatibility (HY) -17200 + (ID) 3650
Total energy: -214232.0 ( -132.24 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3G6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G6W-query.scw
PDB file :
Tito_Scwrl_3G6W.pdb
: