Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKSTNSGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPLVG-KLDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLSQEINVERIVL
2DWU Chain:A ((6-266))
-KHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKGILADN--LNPKHRFFTTGSVSSFEHIAERWLGYQISVDCVDL
General information:
TITO was launched using:
RESULT:
Template:
2DWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -223625 for 2354 contacts (-95.0/contact) +
2D Compatibility (PS) -27613 + (NN) -5960 + (LL) 248
1D Compatibility (HY) -23200 + (ID) 5650
Total energy: -285800.0 ( -121.41 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_2DWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DWU-query.scw
PDB file :
Tito_Scwrl_2DWU.pdb
: