Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSKILLQLMQGKIVAVIRGNSQEEAFQAAQACIKGGISAIEIAYTNSKASQVIEQLVTQYTNQEQVVVGAGTVLDSETARMAILAGAKFIVSPAFNLQTAKLCNRYAIPYLPGCMTLSEVTTALEAGCEIIKIFPGGTLGTSFISSLKAPLPQ-VQIMVTGGVNLTNAKDWFLSGVTAIGIGGEF-----NKLAALGEFDKITEMAKQYKIQLNLN----------------------------------------------------------------
4QCC Chain:A ((5-274))
----------TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDK--ALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREAQKQKEQRQDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEA
General information:
TITO was launched using:
RESULT:
Template:
4QCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176279 for 1741 contacts (-101.3/contact) +
2D Compatibility (PS) -22399 + (NN) -16823 + (LL) 1588
1D Compatibility (HY) -8400 + (ID) 2900
Total energy: -225213.0 ( -129.36 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_4QCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QCC-query.scw
PDB file :
Tito_Scwrl_4QCC.pdb
: