Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNL--------------------------------TPRAASPIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSHITIVVSEKKEG
2WWB Chain:I ((14-153))
-SASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAK-GLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEK---
General information:
TITO was launched using:
RESULT:
Template:
2WWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55220 for 741 contacts (-74.5/contact) +
2D Compatibility (PS) -11362 + (NN) -945 + (LL) 296
1D Compatibility (HY) -3200 + (ID) 1650
Total energy: -72081.0 ( -97.28 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2WWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WWB-query.scw
PDB file :
Tito_Scwrl_2WWB.pdb
: