Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLT-QLETMKDKIQTLDYLFQNCKPEFLGG-TVDEWLNENSSDTIEKSVDMIRHHPLVPS------YVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
1DDZ Chain:A ((317-483))
--HTQTPEILWIGCADSRVPAN--QIINLPAGEVFVHRNIANQCIHSDMSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSRLGLIDNWLRHIRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKLRDMGVVAK------------
General information:
TITO was launched using:
RESULT:
Template:
1DDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50970 for 1242 contacts (-41.0/contact) +
2D Compatibility (PS) -16821 + (NN) -1754 + (LL) 872
1D Compatibility (HY) -7600 + (ID) 1000
Total energy: -77273.0 ( -62.22 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_1DDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DDZ-query.scw
PDB file :
Tito_Scwrl_1DDZ.pdb
: