Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTLWKVLKIVFVSLAALVLLVSVSVFIYHHFQLNKEAALLKGKGTVVDVDGK---KMNVYQEGSGKDTFVFMSGSGIAAPAYEMKGLYSKFSKEN--KIAVVDRAGYGYSEVSHD-DRDIDTVLEQTRKALMKSGNK--PPYILMPHSISGIEAMYWA-QKYPKEIKAIIAMDIGLPQQYVTYKLSGVDRLKVRGFHLLTSIGFHRFIPSAVYNPEVIRQSFLTDEEKEIYKAINFKQFFNADMEHELLQSYQNGSKSVNLPAPKETPVLILDAVSDQNRHSKYAIQNRKDYEAFAAQFNTADIKELRGT-HSIYLYQPDQIYKLSMEFMRKVR----- |
| 3C5V Chain:A ((39-376)) | -----------------------------RDFSPVPWSQYFESMEDVEVENETGKDTFRVYKSGSEGPVLLLLHGGG--HSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDV-VEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEPYTWR--IELAKTEKYWDGWFRGLSNLFLSCPI--PKLLLLAGVD----------RLDKDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C5V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -56207 for 2538 contacts (-22.1/contact) +
2D Compatibility (PS) -29218 + (NN) -4176 + (LL) 5340
1D Compatibility (HY) -7200 + (ID) 2050
Total energy: -93511.0 ( -36.84 by residue)
QMean score : 0.378
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