Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLLFTAVISVPMLLLAVSVLMSVIYDSMFKPMNHGMPFHRSFAYPAMIVVFLISLLLLAFLFSKSIHSLLHKINLLNQTIRHLASDQRVPDKIEVKRADEIGELIKSVNLLIERTTYRELELRQQEEIKKELLQKLRHDINTPLTALRLQLFYLEDQCHGQ-AVFESLYQQIEYISELTNEFNLYSAETLESSYIVNEEVRLNELLETAVKKWDYLYSMSGIELHYKPADQDVIWMSNTLWMERLFDNIFQNTLRHSKAK----KMEVTIE-----HGDVFIRDDGIGFDRN---ESSEGLGLKIIEDTCRLLAITYELHTNDNGTGFLFSKE |
| 4R39 Chain:A ((18-217)) | -------------------------------------------------------------------------------------------------------------------------------ELDRQLAEVQHRVKNHLAMIVSMIRIQSSQAGGVGSQFDSLSRRVEALQLLYQEMDIAGA-----AKATDKIIPLGAYLGRIASAINHIDGRGAIKVNVQAD-TVDVPVETAGRIGLLVSEVLTNALQHAFSDRASGVVQLRSSVMSGEQLRVTVEDDGRGIPEDCDWPNEGNLGSRIVRQLVQGLGAELNVTRGGTGTIVNIDIP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R39.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75409 for 1485 contacts (-50.8/contact) +
2D Compatibility (PS) -20202 + (NN) -8196 + (LL) 12880
1D Compatibility (HY) -6800 + (ID) 1500
Total energy: -99227.0 ( -66.82 by residue)
QMean score : 0.443
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