Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MDVTLGYLRESLSNHLENEVC-------QRICKKMLAKRYANEEEFVK--DLDDNEMSFLNHVLEKEIKYAQNEQDQKRAKELNEVYELLL
1D8B Chain:A ((11-91))
ELNNLRMTYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFKY-FKATIADLSKKRSSE-------------
General information:
TITO was launched using:
RESULT:
Template:
1D8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10491 for 399 contacts (-26.3/contact) +
2D Compatibility (PS) -7095 + (NN) -3073 + (LL) 1720
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -20889.0 ( -52.35 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_1D8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8B-query.scw
PDB file :
Tito_Scwrl_1D8B.pdb
: