Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKPTKLFSTLALAAGMTAAAAGGAGTIHAQQPETTVSIDDLYSYPIDSYLVSAEALNVRTKPSASSQKADTLHLGDSLKLISFSNADWAKVKYKNGKTGFVSTHYIVKAATTV-----------KTKTKTKVYT-SADGK-SIKTLPADTSVSFLGWSKTNKGGFDFDWVFVDY-GGTTGYMKTKDLHMTK
3NPF Chain:A ((13-142))------------------------------------------------YGVVHISVCNLREEGKFTSGMSTQALLGMPVKVLQY--NGWYEIQTPDDYTGWVHRMVITPMSKERYDEWNRAEKIVVTSHYGFAYEKPDESSQPVSDVVAGNRLKWEGSK--------GHFYQVSYPDGRKAYLSKSISQP--


General information:
TITO was launched using:
RESULT:

Template: 3NPF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 487 -23539 -48.33 -202.92
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -48.33
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.334

(partial model without unconserved sides chains):
PDB file : Tito_3NPF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3NPF-query.scw
PDB file : Tito_Scwrl_3NPF.pdb: