Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MRLTHPTPCPENGETMIDRRRSAWRFSVPLVCLLAGLLLAATHGVSGGTEIRRSDAPRLVDLVRRAQASVNRLATEREALTTRIDSVHGRSVDTALAAMQRRSAKLAGVAAMNPVHGPGL-VVTLQDAQRDANG--------------------RFPRDASPDDLVVHQQDIEAVLNALWNAGAEAIQMQDQRI------IAMSIARCV----GNTLLLNGRTYSPPYTIAAIGD-----------AAAMQAALAAAPLVTLYKQY-VVRFGL---GYCEEV-HPDLQIVGYADPVRMHFAQPAG-PLDY------------ |
| 5AFR Chain:A ((8-410)) | LANELIEFVAATVTGIKNSPKENEQAFIDYLHCQYLERFQFFLGLFVFLFIVTIDIAIYDANLANSTLLIIKQISAIYNAGNLASIITHGVSSVFGQLIKSDIDKTRRKLDDISKQFQQLHTSIETPDLLAMVPSIIKLAVSKGATSHDYANYLPSNDLESMRFLNILQSIANKWFLVLKQTLFLDEVEFWSNFYEVLKSLIEQTQSQEFQVCLSVLTNAKRFHNLTNLLNEGSLSDKFKLADKYNQFLSSIPIDEDLQELFPVLASSLKKFRYSGYPVQRFVVLMDKISQEVMDAILSNLSY-GSFLGLYEKSAGMIEEWDDIVQDVNLLIR |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3598 for 1373 contacts (2.6/contact) +
2D Compatibility (PS) -27421 + (NN) -2129 + (LL) 144
1D Compatibility (HY) 1200 + (ID) 750
Total energy: -25358.0 ( -18.47 by residue)
QMean score : 0.029
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