Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERAGASVSIVHACAA--AHTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVFHTNVGVLQGLPDPFTATRYHSLTILPKSLPAVLRVTART-SSGVIMAVQHTGLPIHGVQFHPESILTE-GGHRILANWLTCCGWTQDDTLVRRLENEVLTAISPHFPTSTASAGEATGRTSA
5DOT Chain:A ((207-502))
TKVVAVDCG--IKNNVIRLLVKRGAEVHLVPWNHDF------TKMEYDGILIAGGPGNPALAEPLIQNVRKILESDRKEPLFGISTGNLITGLAAGAKTYKMSMANRGQNQPVLNITN------KQAFITAQNHGYALDN-TLPAGWKPLFVNVNDQTNEGIMHESKPFFAVQFHPEVTPGPIDTEYLFDSFFSLIKKGKATTITSVLP---------------------------
General information:
TITO was launched using:
RESULT:
Template:
5DOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147233 for 1644 contacts (-89.6/contact) +
2D Compatibility (PS) -19215 + (NN) -1259 + (LL) 1964
1D Compatibility (HY) -4400 + (ID) 2000
Total energy: -172143.0 ( -104.71 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_5DOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DOT-query.scw
PDB file :
Tito_Scwrl_5DOT.pdb
: