Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDDADLDLVRRTFAAFARGDLAELTQCFAPDVEQFVPGKHALAGVFRGVDNVVACLGDTAAAADGTMTVTLEDVLSNTDGQVIAVYRLRASRAGKVLDQREAILVTVAGGRITRLSEFYADPAATESFWA
2K54 Chain:A ((1-123))
-MNSEIELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPA---TLLAGNAAEIRVRHIERFKEPDLYGELLTRVIVGN---VVIDHETVTRNFPEGKGEVDVACIYEVENGRIAKAWFKIGEPRIVSQKS-
General information:
TITO was launched using:
RESULT:
Template:
2K54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65890 for 865 contacts (-76.2/contact) +
2D Compatibility (PS) -13192 + (NN) -3100 + (LL) 520
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -84412.0 ( -97.59 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_2K54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K54-query.scw
PDB file :
Tito_Scwrl_2K54.pdb
: