Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRIVQFGVSAVAAAAIGIGAGSGIAAAFDGEDEVTGPDADRARAAAVQAVPGGTAGEVETETGEGAAAYGVLVTRPDGTRVEVHLDRDFRVLDTEPADGDGG
4IPB Chain:A ((5-59))
---------------------------------------PGNVQSTFKKMYPKANGVAWSQD--D--GYYCANFAM-NGFTKNVWFNVRGQWVMTLTDL----
General information:
TITO was launched using:
RESULT:
Template:
4IPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11600 for 334 contacts (-34.7/contact) +
2D Compatibility (PS) -5983 + (NN) -4119 + (LL) 1244
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -21908.0 ( -65.59 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_4IPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IPB-query.scw
PDB file :
Tito_Scwrl_4IPB.pdb
: