Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVAD-INADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWL----YSNFYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPI---DTEATRTVTPAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
2EWM Chain:B ((8-247))
----KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL---GRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELT---FEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANI-GFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIP--RLQVPLDLTGAAAFLASDDASFITGQTLAVDGGMV---
General information:
TITO was launched using:
RESULT:
Template:
2EWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152088 for 1952 contacts (-77.9/contact) +
2D Compatibility (PS) -24803 + (NN) -9103 + (LL) 944
1D Compatibility (HY) -18800 + (ID) 4550
Total energy: -208400.0 ( -106.76 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_2EWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EWM-query.scw
PDB file :
Tito_Scwrl_2EWM.pdb
: