Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ-GMEPAQNRVHAW
4YLY Chain:A ((1-188))
---MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSLDKQK-FKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRPTNGMTVPDYVLQRFSNDEMVTMEKVIEHAARAIEKFVETSRFDHVMNEFNGE
General information:
TITO was launched using:
RESULT:
Template:
4YLY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110309 for 1545 contacts (-71.4/contact) +
2D Compatibility (PS) -20139 + (NN) -6092 + (LL) 556
1D Compatibility (HY) -16400 + (ID) 3300
Total energy: -155684.0 ( -100.77 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_4YLY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YLY-query.scw
PDB file :
Tito_Scwrl_4YLY.pdb
: