Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEV-SVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYT--DALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4BV2 Chain:B ((19-227))
-----LTGAGISTPSGIPDF------------Q-NVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE---V----PLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLK---------------------
General information:
TITO was launched using:
RESULT:
Template:
4BV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82861 for 1499 contacts (-55.3/contact) +
2D Compatibility (PS) -20857 + (NN) -7514 + (LL) 3464
1D Compatibility (HY) -20000 + (ID) 3750
Total energy: -131518.0 ( -87.74 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4BV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BV2-query.scw
PDB file :
Tito_Scwrl_4BV2.pdb
: