Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSPPRFLNSPLSDFFIKWMSRINTWMYRRNDGEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
3R5L Chain:A ((7-122))
----------------------------------G-LGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
General information:
TITO was launched using:
RESULT:
Template:
3R5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58869 for 841 contacts (-70.0/contact) +
2D Compatibility (PS) -13298 + (NN) -10455 + (LL) 1356
1D Compatibility (HY) -15600 + (ID) 5750
Total energy: -102616.0 ( -122.02 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_3R5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5L-query.scw
PDB file :
Tito_Scwrl_3R5L.pdb
: