Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASHEHYYVPAQSKWPIIASIGLLVTVFGLGTWFNDLTAGHKESHGPWIFFVGGLIIAYMLFGWFGNVIRESRAGLYSAQMDRSFRWGMSWFIFSEVMFFAAFFGALFYVRHFAGPWLGGEGAKGVAHMLWPNFQYSWPLLQTPDPKLFPPPSAVIEPWKLPLINTILLVTSSFTVTFAHHALKK-NKRGPLKAWLALTVLLGIAFLILQAEEYVHAYNELGLTLGAGIYGSTFFMLTGFHGAHVTLGALILGIMLIRILRGHFDAEHHFGFEAASWYWHFVDVVWIGLFIFVYVI
1M56 Chain:C ((3-264))
HAKNHDYHILPPSIWPFMASVGAFVMLFGAVLWMHG------SG--PWMGLIGLVVVLYTMFGWWSDVVTESLEGDHTPVVRLGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGP---E---------SPIIDGIFPP---------EG-IITFDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHA----AFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIW
General information:
TITO was launched using:
RESULT:
Template:
1M56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -221033 for 1805 contacts (-122.5/contact) +
2D Compatibility (PS) -27146 + (NN) -7986 + (LL) 1156
1D Compatibility (HY) -30800 + (ID) 5600
Total energy: -291409.0 ( -161.45 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_1M56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M56-query.scw
PDB file :
Tito_Scwrl_1M56.pdb
: