Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPDKDA-APYMQDFQVDTNGKDVMVLDVLALIK-EQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQ--NDTPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
2H89 Chain:B ((13-242))
--KFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTK--IYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKE
General information:
TITO was launched using:
RESULT:
Template:
2H89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109007 for 1697 contacts (-64.2/contact) +
2D Compatibility (PS) -23972 + (NN) -14426 + (LL) 752
1D Compatibility (HY) -24400 + (ID) 6350
Total energy: -177403.0 ( -104.54 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2H89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H89-query.scw
PDB file :
Tito_Scwrl_2H89.pdb
: