Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASGGEPGRIERLKGGIPLGRGGTAEEVARAILWLASDE-ASYSTGTFIDVSGGR
4DMM Chain:C ((30-265))
---IALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITR-DTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGR---IINIASVVGEMGNPGQA-NYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM----------EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGG-
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125301 for 2018 contacts (-62.1/contact) +
2D Compatibility (PS) -24694 + (NN) -6525 + (LL) 216
1D Compatibility (HY) -20000 + (ID) 5300
Total energy: -181604.0 ( -89.99 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: