Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRLEP---GMARIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIRHVEENRFALLERMTQEILDLVMENPAVRYAEVEVDKPHALRFAESVSITLAGHR-
3V9O Chain:A ((13-139))
-ALLHPRLADCRRLYLRNHEVYMNIGAGEQRVVINVDLFVPLALTTPVED-----KLREVVDYDLMKQSVAQCVARGHIHLQETLCDAIAASLLAHDAVRAVRVSTEKPDAYPDCDAVGVEVFRIKD
General information:
TITO was launched using:
RESULT:
Template:
3V9O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54923 for 805 contacts (-68.2/contact) +
2D Compatibility (PS) -12014 + (NN) 1124 + (LL) 760
1D Compatibility (HY) -7600 + (ID) 1150
Total energy: -73803.0 ( -91.68 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3V9O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9O-query.scw
PDB file :
Tito_Scwrl_3V9O.pdb
: