Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKYIALPAVSLLALALAACSTPPNANLEQARSNFSALQSQPDATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYLTNQRIELAKQTIVLRNAEAQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGDVLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANYNQRLSERRADSVRMALLSR-GISPERVATRGYGKEYPVASNGTSSGRAMNRRVEVTISNDAKPVAPRSSVSG |
3TD4 Chain:H ((16-120)) | -----------------------------------------------------------------------------------------------------------------------------------------------VFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATIT-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21453 for 762 contacts (-28.2/contact) +
2D Compatibility (PS) -11883 + (NN) -9812 + (LL) 11372
1D Compatibility (HY) -4400 + (ID) 2200
Total energy: -38376.0 ( -50.36 by residue)
QMean score : 0.630
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