Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRVAPRDSAAQAASAVAESVRYQGRKASRQGSEQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFALFVERNAEALSAFWSSVEGDLQEMAAVLADDPGARGSLVERIVELAVQYVQVQLTERREHLLAEQAFRQEALLNPRLRELADAHQRILSLGAVHFFQVLGSGQPEQDAKVLTSIILQMEYQGLVDGVEQLAVDEMRAILRRYLNLVMGL
2NP5 Chain:A ((9-187))
----------------------------------TSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLARLSEVERG-------------------GDPARALFAAMSQLLPLDEA-RSREAHVMAAFAVRAATSPSLAEIRRKTLFTIRTGLSAVLIGIGTPEAETRAALLLATVDGLALDAIGSPAL-YPPEYLEHALDIQIGMI---
General information:
TITO was launched using:
RESULT:
Template:
2NP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109552 for 1339 contacts (-81.8/contact) +
2D Compatibility (PS) -19925 + (NN) -12370 + (LL) 4104
1D Compatibility (HY) -4000 + (ID) 1400
Total energy: -143143.0 ( -106.90 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2NP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NP5-query.scw
PDB file :
Tito_Scwrl_2NP5.pdb
: