Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVK-GALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
1J4I Chain:A ((2-106))
----VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL-----
General information:
TITO was launched using:
RESULT:
Template:
1J4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56984 for 766 contacts (-74.4/contact) +
2D Compatibility (PS) -10629 + (NN) 3222 + (LL) 328
1D Compatibility (HY) -8400 + (ID) 2050
Total energy: -74513.0 ( -97.28 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1J4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J4I-query.scw
PDB file :
Tito_Scwrl_1J4I.pdb
: