Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIE-SGIDSDETLAAAVGSDAERIHRLMRLLVAF---EIFQGDTRDGYANTPTSHLLRD-VEGSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFG---EDFYSYLKRCPDAGRRFLLAMKA-SNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE-VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTT---EEVVDLLGRGGF-AVERIVDLPMETRMIVAARA-- |
| 4QVG Chain:A ((4-344)) | -------ELSALVPVLFGHAAFQQLNAGCQLGLFELLHERGPLSAEEVADALRLPRRSADILLLGTTALGLSTVTDGGYRNG---APIGAAFRDGLWPVLRDIVQYQDKIAYQPAADYVESLRTGQNAGIRHFPGTTRDLYSRLAAVPGLEELFYRGMHAWSQLSNPVLLAQPDFTRVHRVLDVGGGDAVNAVALARAHPSLRVTVLDRPGALEVARKTIAEAGLEERVRTHAADIFTDSYPAGHDCVLFAHQLVIWSPEQNLTLLRKAYDAVEPGGRVLVFNAFTDDDRTGPLYAALDNVYFTTLPFRHSTIHRWADCESWLREAGFTDVGRTAPPGWTPHGVVSGSRPR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180750 for 2500 contacts (-72.3/contact) +
2D Compatibility (PS) -35590 + (NN) -21866 + (LL) 416
1D Compatibility (HY) -12800 + (ID) 4200
Total energy: -254790.0 ( -101.92 by residue)
QMean score : 0.402
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