Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MKKIFVFAALAGSAVLAGCASPQHGAIPVVDSG---------------TPVSNQESGGFRITRTQVPRTQQGAATQGIPQGGDSGVVVMVPQGANSAPIQ---------TFPAQSGAAPISSAPLGT-GTQYQAPPSSASTPPLGGSYNMPPSGASRSAPTGIPASGSAGSLAADEQLDGPVLAMLTTAQQQQGSGDLNSAAASLERAQRIAP----REPQVLYRLAQVRLAQGDAAQAEQVARRGLSYA-NGRPALQAGLWELIAQAREKQGDSAGAALARQKAKVSS |
| 2YN5 Chain:A ((1-283)) | TPPNAPVVTYSDIVNDLIIMQGTAEAKSQLIITDSEGNTYTLTVPDNGKWSMAIPYPSEGKFTITSVDAIGNRSDDVPLDIMK---EVPVISLSPDSDSGTVGDNITRDKQPTFIIGNLESDVVVVQVDINGTVYNAEKNADGV----WFFTPGTPLADGSYTISVIASDAAGNQKNSLPITVTIDSTLTVPEIALAAGEDNGASDSDNVTNHTQPKFTLQHIDADVTGVTVNVTHNGVTDIYQATQGADGWTFTPPAAWNDGNYTLSVTVVDRAGNSQQSA--SLAVTVDS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YN5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10784 for 1666 contacts (6.5/contact) +
2D Compatibility (PS) -25398 + (NN) 1279 + (LL) -376
1D Compatibility (HY) -4800 + (ID) 1900
Total energy: -20411.0 ( -12.25 by residue)
QMean score : 0.034
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