Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSACSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHPNYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWGRTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKMQNVYKGDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN
4AFZ Chain:A ((1-226))
---------------------IIGGTECKPHSRPYMAYLEIVT--GPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN
General information:
TITO was launched using:
RESULT:
Template:
4AFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163931 for 1926 contacts (-85.1/contact) +
2D Compatibility (PS) -23962 + (NN) -5985 + (LL) 1640
1D Compatibility (HY) -22400 + (ID) 8300
Total energy: -222938.0 ( -115.75 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_4AFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AFZ-query.scw
PDB file :
Tito_Scwrl_4AFZ.pdb
: