Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVSEGTRGCSDRQPGALTQGHSCSRKMNASRCLSEEVGSLRPLTMAVLSASFVVGVLGNGLVPW-VTVFRMARTVSTVCFFHLALADFMLSLSLPILVYYIVSRQWLLGEWACKLYTGFVFLTFSTSNCLLVLISVDRCISVLYPVWALNHRTEQRASWLAFGVWLLAAALCSAHLKFRTTRKWNGCMQCYLQFNLENETAQMWTQEVFGRQMAVIMAHFLLGFLGPLAIIGTCAHLIRAKLLREGWVHANRPKRLLLVLVSALSAGSHLT
4EJ4 Chain:A ((19-205))
-----------------------------------------------ALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTQPRDGAVVCMLQF-----PSPSWYWDTVTK-----ICVFLFAFVVPILIITVCYGLMLLRLRSVRNIFEMLRIDEGLRLKIYKNTEGYYT
General information:
TITO was launched using:
RESULT:
Template:
4EJ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143986 for 1265 contacts (-113.8/contact) +
2D Compatibility (PS) -18694 + (NN) -3730 + (LL) 2832
1D Compatibility (HY) -19600 + (ID) 2950
Total energy: -186128.0 ( -147.14 by residue)
QMean score : 0.143
(partial model without unconserved sides chains):
PDB file :
Tito_4EJ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EJ4-query.scw
PDB file :
Tito_Scwrl_4EJ4.pdb
: