Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAISDFFVGVISIPLYIPHTLF-EWDFGKEICVFWLTTDYLLCTASVYNIVLISYDRYLSVSNAVSYRTQHTGVLKIVTLMVA-VWVLAFLVNGPMILVSESWKDEGSECEPGFFSEWYILAITSFLEFVIPVILVAYFNMNIYWSLWKRDHLSRCQS-----HPGLTAVSSNICGHSFRGRLSSRRSLSASTEVPASFHSERQRRKSSLMFSSR-------TKMNSNTIASKMGSFSQSDSVALHQR-------EHVELLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAF-----WLQWFNSFVNPLLYPLCHKRFQKAFLKIFCIKKQPLPSQHSRSVSS |
| 4IAR Chain:A ((14-398)) | --------SISLPWKVLLVMLLALITLATTLSNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWTLGQVVCDFWLSSDITCCTASIWHLCVIALDRYWAITDAVEYSAKRTP--KRAAVMIALVWVFSISISLPPFFWRQA-----SECVVNTDHILYTV-YSTVGAFYFPTLLLIALYGRIY--VEARSRIADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLAARERKATKTLGIILGAFIVCWLPFFIISLVMPI----------WFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKLIRFK-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -229963 for 2523 contacts (-91.1/contact) +
2D Compatibility (PS) -35360 + (NN) -4358 + (LL) 1452
1D Compatibility (HY) -33600 + (ID) 4550
Total energy: -306379.0 ( -121.43 by residue)
QMean score : 0.212
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