Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGMEGLLQNSTNFVLTGLITHPAFPGLLFAVVFSIFVVAIT-ANLVMILLIHMDSRLHTPMYFLLSQLSIMDTIYICITVPKMLQDLLSKDKTISFLGCAVQIFYLTL----IGGEFFLLGLMAYDRYVAVCNPLRYPLLMNRRVCLFMVVGSWVGGSLDGFMLTPVTMSFPFCRSREINHFFCEIPAVLKLSCTDTSLYETLMYACCVLMLLIPLSVISVSYTHILLTVHRM--NSAEGRRKAFATCSSHIMVVSVFYGAAFYTNVLPHSYHTPEKDKVVSAFYTILTPM------LNPLIYSLRNKDVAAALRKVLGRCGSSQSIRVATVIRKG |
| 4LDL Chain:A ((186-461)) | -----------------------------GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE---FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL--PIQMHWYRATHQEAINCYAE------ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKFALKEHKALKTLGIIMGTFTLCWLPFFIVNIV----HVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226305 for 1849 contacts (-122.4/contact) +
2D Compatibility (PS) -26167 + (NN) -5023 + (LL) 4240
1D Compatibility (HY) -24800 + (ID) 3050
Total energy: -281105.0 ( -152.03 by residue)
QMean score : 0.300
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