Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIINTSYVEITTFFLVGMPGLEYAHIWISIPICSMYLIAILGNGTILFIIKTEPSLHGPMYYFLSMLAMSDLGLSLSSLPTVLSIFLFNAPETSSSACFAQEFFIHGFSVL--ESSV--LLIMSFDRFLAIHNPLRYTSILTTVRVAQIGIVFSFKSMLLVLPFPFTLRSL---------RYCKKNQLSHSYCLHQDVMKLACSDNRIDVIYGFFGALCLMVDFILIAVSYTLIL------------KTVPGIASKKEELKALNTCVSHICAVIIFYLPIINLAVVHRFA------GHVSPLINVLMANVLLLVPPLMKPIVYCVKTKQIRVRVVAKLCQWKI |
| 3VGA Chain:A ((15-296)) | ----------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI------STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAK--GII----AICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVA---CLFEDVVPM-----NYMVYFNFFA--CVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH-APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -210423 for 1760 contacts (-119.6/contact) +
2D Compatibility (PS) -24940 + (NN) -8378 + (LL) 4628
1D Compatibility (HY) -30400 + (ID) 3500
Total energy: -273013.0 ( -155.12 by residue)
QMean score : 0.324
|
|
|