Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPSASAMIIFNLSSYNPGPFILVGIPGLEQFHVWI---GIPFCIIYIVAVVGNCILLYLIVVEHSLHEPMFFFLSMLAMTDLILSTAGVPKALSIFWLGAREITFPGCLTQMFFLHYNFVLDS-------AILMAMAFDHYVAICSPLRYTTILTPKTIIKSAMGISFRSFCIILPDVFLLTCLPFCRTRIIPHTYCEHIG-VAQLACADISINFWYGFCVPIMTVISDVILIAVSYAHILC-AVFGLPSQD----ACQKALGTCGSHVCVILMFYTPAFFSILAHRFGHNVSRTFHIMFANLYIVIPPALNPMVYGVKTKQIRDKVILLFSKGTG |
4LDL Chain:A ((179-447)) | -------------------------------EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP-------FGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA---------RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263575 for 1756 contacts (-150.1/contact) +
2D Compatibility (PS) -24738 + (NN) 219 + (LL) 3332
1D Compatibility (HY) -23600 + (ID) 3200
Total energy: -311562.0 ( -177.43 by residue)
QMean score : 0.113
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