Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDKSNSSVVSEFVLLGLCSSQKLQLFYFCFFSVLYTVIVLGNLLIILTVTSDTSLHSPMYFLLGNLSFVDICQASFATPKMIADFLSAHETISFSGCIAQIFFIHLFTGGEMVLLVSMAYDRYVAICKPLYYVVIMSRRTCTVLVMISWAVSLVHTLSQLSFTVNLPFCGPNVVDSFFCDLPRVTKLACL--DSYIIEILIVVNSGILSLSTFSLLVSSYIIILVTV--WLKSSAAM----AKAFSTL------ASHIAVVILFFGPC--------IFIYVWP-FTISPLD-KFLAIFYTVFTPVLNPIIYTLRNRDMKAAVRKIV-NHYLRPRRISEMSLVVRTSFH |
| 3VG9 Chain:A ((21-309)) | --------------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN---CGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216769 for 1834 contacts (-118.2/contact) +
2D Compatibility (PS) -25548 + (NN) 1766 + (LL) 5452
1D Compatibility (HY) -26800 + (ID) 3650
Total energy: -265549.0 ( -144.79 by residue)
QMean score : 0.281
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