Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSAGLGLLMLVAVVEFLIGLIGNGSLVVWSFREWIRKFNWSSYNLIILGLAGCRFLLQWLIILDLSLFPLFQSSRWLRYLSIFWVLVSQASLWFATFLSVFYCKKITTFDRPAYLWLKQRAYNLSLWCLLGYFIINLLLTVQIGLTFYHPPQGNSSIRYPFESWQYLYAFQLNSGSYLPLVVFLVSSGMLIVSLYTHHKKMKVHSAGRRDVRAKAHITALKSLGCFLLLHLVYIMASPFSITSKTYPPDLTSVFIWETLMAAYPSLHSLILIMGIPRVKQTCQKILWKTVCARRCWGP
3UGJ Chain:A ((1204-1244))
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HGEGRVEVRDDAHLAALESKG---LVALRYV--DNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERVFRTVANSWHPENWGEDSPWMR
General information:
TITO was launched using:
RESULT:
Template:
3UGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4213 for 163 contacts (-25.8/contact) +
2D Compatibility (PS) -4526 + (NN) -2738 + (LL) 18988
1D Compatibility (HY) -2800 + (ID) 900
Total energy: 3811.0 ( 23.38 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_3UGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UGJ-query.scw
PDB file :
Tito_Scwrl_3UGJ.pdb
: