Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEEPVEKKWRIKRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYKVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELAN-CDTPAPVVINEYTNIASDLLDKPSEIGFINGLLDKAKSAVKLNKNS
3IMQ Chain:A ((41-140))
--------------------------------------------------------DVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAENSH-KFVNGVLDKAAPVIRPNKK-
General information:
TITO was launched using:
RESULT:
Template:
3IMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57508 for 676 contacts (-85.1/contact) +
2D Compatibility (PS) -10179 + (NN) -1427 + (LL) 4648
1D Compatibility (HY) -7600 + (ID) 1650
Total energy: -73716.0 ( -109.05 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3IMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IMQ-query.scw
PDB file :
Tito_Scwrl_3IMQ.pdb
: