Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWMAGMLYLPRLYVYHATVKPGSE-SDSLLQTMERRFLRYI-INPAMLFSLSFGIALMIIREAYREGWFHVKALALFFMFGIHGLLAMHRKKFAMGSNEKNHVYFRVLNEMVTVLIIIIVIMIVVKPF
3OMD Chain:A ((15-63))
--LGGMDHLKRVIDKARAHVAGTLGEYTYN-PLDQAFFSFFGLDHEKFAEAVKSRPQDQDMLAWVHSQSPRSKNPKEVESFNREYESRSPDSPEKWDYFRSVRDSLAPGRTDITTWVKLLDLEEKRPV
General information:
TITO was launched using:
RESULT:
Template:
3OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16368 for 242 contacts (-67.6/contact) +
2D Compatibility (PS) -4645 + (NN) -503 + (LL) 484
1D Compatibility (HY) 2800 + (ID) 200
Total energy: -18432.0 ( -76.17 by residue)
QMean score : 0.071
(partial model without unconserved sides chains):
PDB file :
Tito_3OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OMD-query.scw
PDB file :
Tito_Scwrl_3OMD.pdb
: