Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRESDQCNEESNRQSTTHIHVY-NRSLDFLGYLLLRYCIDSLLVRCGHTIVIYGNTTNQSRENKKKDSEDSRKLLALGIVAAVVCVGFPC
1VRD Chain:A ((1-18))
-----------------------MKEALTFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHK
General information:
TITO was launched using:
RESULT:
Template:
1VRD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -690 for 40 contacts (-17.2/contact) +
2D Compatibility (PS) -1681 + (NN) 676 + (LL) 1440
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -2055.0 ( -51.38 by residue)
QMean score : -0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1VRD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VRD-query.scw
PDB file :
Tito_Scwrl_1VRD.pdb
: