Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKLLKKFYGIIYCLYHALIDTIYNDGMEHAGYLSFLILLSIFPFLIVLMALASTFANFLDQYNIGWTFIIDNMPQDILASLMPRIREIISGPPQSLLTLAIVGAIWTASSTIEGLRTILNKAYKVPVSPPYVLRRILSILQFLIITFIITLTIVFSTLVPMLIDFSYHGLSYTRYLLIEFVLFIVVSWLYFMLPNIRQNVSDVFPGSYIAVMLWTVSASAFKQYLRASFDQLDLIYGSLGGVVVSLLFFYMVSLIFIYGAKFNFQLKCFNGSR |
2K8J Chain:X ((5-23)) | ---------------------------------GAAYALYGVWPLLLLLLALPPRAYA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2K8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10653 for 70 contacts (-152.2/contact) +
2D Compatibility (PS) -1815 + (NN) 905 + (LL) 21696
1D Compatibility (HY) -3600 + (ID) 300
Total energy: 6233.0 ( 89.04 by residue)
QMean score : -0.346
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