Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESSVINQSEKVTKPAIDLFGCLYATGRRKESAARVWIKSGSGKFSVNQQDKLLSYFKRESVCQIVKMPLIVTSTLDKYDVFATVKGGGLSGQAGALAHGISKALSKISQDLYSILRKSGYLTRNSCVKERKKYGQRGARAKYQFSKR
1FJG Chain:I ((5-128))
-----------------------YGTGRRKEAVARVFLRPGNGKVTVNGQD-FNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
1FJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47816 for 906 contacts (-52.8/contact) +
2D Compatibility (PS) -12546 + (NN) 688 + (LL) 1704
1D Compatibility (HY) -4400 + (ID) 2750
Total energy: -65120.0 ( -71.88 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1FJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJG-query.scw
PDB file :
Tito_Scwrl_1FJG.pdb
: