Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYVTTKDITVTKATIAEDINQEIGLSKEDSAAIIDDILDEIKASLVKDGIVKISSFGTFLIKKKKERPGNVPNTSKKVVIQARNSVSFRPSKVIKKLINNQ
2IIE Chain:A ((47-137))
----------LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENA
General information:
TITO was launched using:
RESULT:
Template:
2IIE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6573 for 490 contacts (-13.4/contact) +
2D Compatibility (PS) -9884 + (NN) -2209 + (LL) 764
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -25552.0 ( -52.15 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2IIE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IIE-query.scw
PDB file :
Tito_Scwrl_2IIE.pdb
: