Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQQLVHKENIMLNLSATDKESVLSQMSDVLFQNGFVKSTFKDAVIDREKEFATGLPTHLCSVAIPHTDVEHINHRTIGVAVLEKEVPFIEMGTLDQQTEVKIVFMLAMDKVDDQLKLLQQLMQIFQSEEKLEQILRTKDETILATLINDYLEYN
4M62 Chain:S ((22-149))
-------------------QNDIIKALASPLINDGMVVSDFADHVITREQNFPTGLPVEPVGVAIPHTDSKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDEDFMQQLLVMNDDEIYQSI--------
General information:
TITO was launched using:
RESULT:
Template:
4M62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82239 for 955 contacts (-86.1/contact) +
2D Compatibility (PS) -14277 + (NN) -5614 + (LL) 1984
1D Compatibility (HY) -14000 + (ID) 2150
Total energy: -116296.0 ( -121.78 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4M62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M62-query.scw
PDB file :
Tito_Scwrl_4M62.pdb
: