Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIRGAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGTDYVGEAEYVQKIQQGWFDFDVVVATPDMMGEVG-KLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKIDTASFK
3U56 Chain:A ((2-229))
-PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS--
General information:
TITO was launched using:
RESULT:
Template:
3U56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100414 for 1845 contacts (-54.4/contact) +
2D Compatibility (PS) -25358 + (NN) -16986 + (LL) 404
1D Compatibility (HY) -18400 + (ID) 6050
Total energy: -166804.0 ( -90.41 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_3U56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U56-query.scw
PDB file :
Tito_Scwrl_3U56.pdb
: