Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDQHNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAFDETKEK
2PEX Chain:A ((16-146))
-----QLDNQLSFALYSANLAMHKLYRG-LLKALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR-------VIIALTETGRALRSKAGAVPEQVFCASACSLDELRQLKQELEKL----------
General information:
TITO was launched using:
RESULT:
Template:
2PEX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74965 for 787 contacts (-95.3/contact) +
2D Compatibility (PS) -13167 + (NN) -4192 + (LL) 1684
1D Compatibility (HY) -14000 + (ID) 2250
Total energy: -106890.0 ( -135.82 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_2PEX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PEX-query.scw
PDB file :
Tito_Scwrl_2PEX.pdb
: