Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTGRIVKSISGVYQVDVNGERFNTKPRGLFRKKKFSPVVGDIVEFEVQNINEGYIHQVFERKNELKRP--PVS-NIDTLVIVMSAVEPNFSTQLLDRFLVIAHSYQLNARVLVTKKDKTPIEKQFEINELLKIYENIGYETEFIGN--DDDRKKIVEAWPAGLIVLSGQSGVGKSTFLNHYRPELNLETNDISKSLNRGKHTTRHVELFERQNGYIADTPGFSALDFDHIDKDEIKDYFLELNRYGETCKFRNCNHIKEPNCNVKHQLEIGNIAQFRYDHYLQLFNEISNRKVRY |
4A2I Chain:V ((74-345)) | ------------------------------IRRTIRSLVTGDRVVWRPGKV-KGIVEAVHE-TSVLTRPVKPIAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNAL---LGLQNEILTNTAARLYHFP--------HGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4A2I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92102 for 1705 contacts (-54.0/contact) +
2D Compatibility (PS) -25566 + (NN) -8348 + (LL) 3196
1D Compatibility (HY) -20400 + (ID) 3950
Total energy: -147170.0 ( -86.32 by residue)
QMean score : 0.507
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