Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQIELFSIDKFKCNSEAKYYLNIIEGEWHPQDLNDSPLKFILSTSDDSDYICKYINTEHKQLTLYNKNNSSIVIEIFIPNDNKILLTIMNTEALGTSPRMTFIKHKS
2YKT Chain:A ((139-187))
------------KCQAELKKLRKK------PQKYSDKELQYIDAISNKQGELENYVSDGYK-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YKT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3625 for 198 contacts (-18.3/contact) +
2D Compatibility (PS) -4139 + (NN) 952 + (LL) 5068
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -3544.0 ( -17.90 by residue)
QMean score : 0.187
(partial model without unconserved sides chains):
PDB file :
Tito_2YKT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKT-query.scw
PDB file :
Tito_Scwrl_2YKT.pdb
: