Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIVQGALDTDKLLKDYQEEACTKNFGAFCVFVGIVR---EEGNVQGLSFDIYEALLKTWFEKWRHQPKDLGVVLKMA--HSVGDVLIRHSSFLCVLMGANTKNALKLYEYFFKNFKRNAPIWKCYLSDNERIYAKKKDHLLKGSGLLA
4AP8 Chain:A ((32-129))
---------------------------GAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYE--------------------
General information:
TITO was launched using:
RESULT:
Template:
4AP8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70129 for 626 contacts (-112.0/contact) +
2D Compatibility (PS) -10113 + (NN) -2742 + (LL) 3392
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -86042.0 ( -137.45 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_4AP8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AP8-query.scw
PDB file :
Tito_Scwrl_4AP8.pdb
: