Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLEWGLLIFLILVFLVGIGYYVFMVFSSKD
2LOO Chain:A ((2-23))
----DLIGFGYAALVTFGSIFGYKRRGGVPSL
General information:
TITO was launched using:
RESULT:
Template:
2LOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11136 for 82 contacts (-135.8/contact) +
2D Compatibility (PS) -2168 + (NN) -564 + (LL) 280
1D Compatibility (HY) 800 + (ID) 200
Total energy: -12988.0 ( -158.39 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_2LOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LOO-query.scw
PDB file :
Tito_Scwrl_2LOO.pdb
: